Genome Consortium Data Sets
Linepithema humile Genome Assembly version 1.0.
Lhum_1.0_scaffolds.fa.gz: contains the L. humile genome assembled into scaffolds, in FASTA format, compressed.
Linepithema humile Official Gene Set v1.2, with assigned Hymenoptera Genome Database identifiers (HGD-IDs)
This updated and renamed version of the L. humile OGS incorporates the extensive efforts on manual annotation from the Argentine ant research community.
lhum_OGSv1.2_pep.fa.gz: contains all predicted proteins in this gene set.
lhum_OGSv1.2_transcript.fa.gz: contains all translated regions.
lhum_OGSv1.2.gff3.gz: contains all gene and pseudogene annotations, in a gff version 3 file.
Linepithema humile Official Gene Set v1.2, with partially assigned HGD-IDs.
This version of the L. humile OGS incorporates manual annotation from the Argentine ant research community.
lhum.genome.OGS.1.2.maker.proteins.fasta.gz: contains all predicted proteins for this gene set.
lhum.genome.OGS.1.2.maker.transcripts.fasta.gz: contains all transcripts for genes (translated region).
lhum.genome.OGS.1.2.gff.gz: contains all gene and pseudogene annotations.
The file lhum.need_names.list lists all gene models that did not have an HGD identifier.
Linepithema humile Official Gene Set v1.1
lhum.OGS1.1.proteins_hgd_id_20100518.fasta.gz: Protein set.
lhum.OGS1.1.proteins_hgd_id_single_isoform_20100518.fasta.txt: Lists Proteins with single isoforms.
lhum.OGS1.1.transcripts_hgd_id_20100518.fasta.gz: Transcripts.