Genome Publications

Acromyrmex echinatior
Nygaard S, Zhang G, Schiøtt M, Li C, Wurm Y, Hu H, Zhou J, Ji L, Qiu F, Rasmussen M, Pan H, Hauser F, Krogh A, Grimmelikhuijzen CJ, Wang J, Boomsma JJ. The genome of the leaf-cutting ant Acromyrmex echinatior suggests key adaptations to advanced social life and fungus farming. Genome Res. 2011 Aug;21(8):1339-48. doi: 10.1101/gr.121392.111. Epub 2011 Jun 30. PubMed PMID: 21719571; PubMed Central PMCID: PMC3149500.

Apis cerana
Park D, Jung JW, Choi BS, Jayakodi M, Lee J, Lim J, Yu Y, Choi YS, Lee ML, Park Y, Choi IY, Yang TJ, Edwards OR, Nah G, Kwon HW. Uncovering the novel characteristics of Asian honey bee, Apis cerana, by whole genome sequencing. BMC Genomics. 2015 Jan 2;16:1. doi: 10.1186/1471-2164-16-1. PubMed PMID: 25553907; PubMed Central PMCID: PMC4326529.

Apis dorsata
Fouks B, Brand P, Nguyen HN, Herman J, Camara F, Ence D, Hagen D, Hoff KJ, Nachweide S, Romoth L, Walden KK, Guigo R, Stanke M, Narzisi G, Yandell M, Robertson HM, Koeniger N, Chantawannakul P, Schatz MC, Worley KC, Robinson GE, Elsik CG, Rueppell O. The genomic basis of evolutionary differentiation among honey bees. Genome Res. 2021 May 4:gr.272310.120. doi: 10.1101/gr.272310.120. Epub ahead of print. PMID: 33947700.

Apis florea
Fouks B, Brand P, Nguyen HN, Herman J, Camara F, Ence D, Hagen D, Hoff KJ, Nachweide S, Romoth L, Walden KK, Guigo R, Stanke M, Narzisi G, Yandell M, Robertson HM, Koeniger N, Chantawannakul P, Schatz MC, Worley KC, Robinson GE, Elsik CG, Rueppell O. The genomic basis of evolutionary differentiation among honey bees. Genome Res. 2021 May 4:gr.272310.120. doi: 10.1101/gr.272310.120. Epub ahead of print. PMID: 33947700.

Apis mellifera
Amel_HAv3.1:
Wallberg A, Bunikis I, Pettersson OV, Mosbech MB, Childers AK, Evans JD, Mikheyev AS, Robertson HM, Robinson GE, Webster MT. A hybrid de novo genome assembly of the honeybee, Apis mellifera, with chromosome-length scaffolds. BMC Genomics. 2019 Apr 8;20(1):275. doi: 10.1186/s12864-019-5642-0. PubMed PMID: 30961563; PubMed Central PMCID: PMC6454739.

Amel_4.5 and amel_OGSv3.2:
Elsik CG, Worley KC, Bennett AK, Beye M, Camara F, Childers CP, de Graaf DC, Debyser G, Deng J, Devreese B, Elhaik E, Evans JD, Foster LJ, Graur D, Guigo R; HGSC production teams, Hoff KJ, Holder ME, Hudson ME, Hunt GJ, Jiang H, Joshi V, Khetani RS, Kosarev P, Kovar CL, Ma J, Maleszka R, Moritz RF, Munoz-Torres MC, Murphy TD, Muzny DM, Newsham IF, Reese JT, Robertson HM, Robinson GE, Rueppell O, Solovyev V, Stanke M, Stolle E, Tsuruda JM, Vaerenbergh MV, Waterhouse RM, Weaver DB, Whitfield CW, Wu Y, Zdobnov EM, Zhang L, Zhu D, Gibbs RA; Honey Bee Genome Sequencing Consortium. Finding the missing honey bee genes: lessons learned from a genome upgrade. BMC Genomics. 2014 Jan 30;15:86. doi: 10.1186/1471-2164-15-86. PubMed PMID: 24479613; PubMed Central PMCID: PMC4028053.

Older Amel assemblies and OGS:
Honeybee Genome Sequencing Consortium. Insights into social insects from the genome of the honeybee Apis mellifera. Nature. 2006 Oct 26;443(7114):931-49. Erratum in: Nature. 2006 Nov 23;444(7118):512. PubMed PMID: 17073008; PubMed Central PMCID: PMC2048586.

Athalia rosea
Oeyen JP, Baa-Puyoulet P, Benoit JB, Beukeboom LW, Bornberg-Bauer E, Buttstedt A, Calevro F, Cash EI, Chao H, Charles H, Chen MM, Childers C, Cridge AG, Dearden P, Dinh H, Doddapaneni HV, Dolan A, Donath A, Dowling D, Dugan S, Duncan E, Elpidina EN, Friedrich M, Geuverink E, Gibson JD, Grath S, Grimmelikhuijzen CJP, Große-Wilde E, Gudobba C, Han Y, Hansson BS, Hauser F, Hughes DST, Ioannidis P, Jacquin-Joly E, Jennings EC, Jones JW, Klasberg S, Lee SL, Lesný P, Lovegrove M, Martin S, Martynov AG, Mayer C, Montagné N, Moris VC, Munoz-Torres M, Murali SC, Muzny DM, Oppert B, Parisot N, Pauli T, Peters RS, Petersen M, Pick C, Persyn E, Podsiadlowski L, Poelchau MF, Provataris P, Qu J, Reijnders MJMF, von Reumont BM, Rosendale AJ, Simao FA, Skelly J, Sotiropoulos AG, Stahl AL, Sumitani M, Szuter EM, Tidswell O, Tsitlakidis E, Vedder L, Waterhouse RM, Werren JH, Wilbrandt J, Worley KC, Yamamoto DS, van de Zande L, Zdobnov EM, Ziesmann T, Gibbs RA, Richards S, Hatakeyama M, Misof B, Niehuis O. Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera. Genome Biol Evol. 2020 Jul 1;12(7):1099-1188. doi: 10.1093/gbe/evaa106. PMID: 32442304; PMCID: PMC7455281.

Atta cephalotes
Suen G, Teiling C, Li L, Holt C, Abouheif E, Bornberg-Bauer E, Bouffard P, Caldera EJ, Cash E, Cavanaugh A, Denas O, Elhaik E, Favé MJ, Gadau J, Gibson JD, Graur D, Grubbs KJ, Hagen DE, Harkins TT, Helmkampf M, Hu H, Johnson BR, Kim J, Marsh SE, Moeller JA, Muñoz-Torres MC, Murphy MC, Naughton MC, Nigam S, Overson R, Rajakumar R, Reese JT, Scott JJ, Smith CR, Tao S, Tsutsui ND, Viljakainen L, Wissler L, Yandell MD, Zimmer F, Taylor J, Slater SC, Clifton SW, Warren WC, Elsik CG, Smith CD, Weinstock GM, Gerardo NM, Currie CR. The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle. PLoS Genet. 2011 Feb 10;7(2):e1002007. doi: 10.1371/journal.pgen.1002007. PubMed PMID: 21347285; PubMed Central PMCID:
PMC3037820.

Atta columbica
Nygaard S, Hu H, Li C, Schiøtt M, Chen Z, Yang Z, Xie Q, Ma C, Deng Y, Dikow RB, Rabeling C, Nash DR, Wcislo WT, Brady SG, Schultz TR, Zhang G, Boomsma JJ. Reciprocal genomic evolution in the ant-fungus agricultural symbiosis. Nat Commun. 2016 Jul 20;7:12233. doi: 10.1038/ncomms12233. PubMed PMID: 27436133; PubMed Central PMCID: PMC4961791.

Belonocnema treatae
The B. treatae genome is not yet published. Please follow the data usage policy.

Bombus bifarius
Heraghty SD, Sutton JM, Pimsler ML, Fierst JL, Strange JP, Lozier JD. De Novo Genome Assemblies for Three North American Bumble Bee Species: Bombus bifarius, Bombus vancouverensis, and Bombus vosnesenskii. G3 (Bethesda). 2020 Aug 5;10(8):2585-2592. doi: 10.1534/g3.120.401437. PMID: 32586847; PMCID: PMC7407468.

Bombus impatiens
Sadd BM, Barribeau SM, Bloch G, de Graaf DC, Dearden P, Elsik CG, Gadau J, Grimmelikhuijzen CJ, Hasselmann M, Lozier JD, Robertson HM, Smagghe G, Stolle E, Van Vaerenbergh M, Waterhouse RM, Bornberg-Bauer E, Klasberg S, Bennett AK, Câmara F, Guigó R, Hoff K, Mariotti M, Munoz-Torres M, Murphy T, Santesmasses D, Amdam GV, Beckers M, Beye M, Biewer M, Bitondi MM, Blaxter ML, Bourke AF, Brown MJ, Buechel SD, Cameron R, Cappelle K, Carolan JC, Christiaens O, Ciborowski KL, Clarke DF, Colgan TJ, Collins DH, Cridge AG, Dalmay T, Dreier S, du Plessis L, Duncan E, Erler S, Evans J, Falcon T, Flores K, Freitas FC, Fuchikawa T, Gempe T, Hartfelder K, Hauser F, Helbing S, Humann FC, Irvine F, Jermiin LS, Johnson CE, Johnson RM, Jones AK, Kadowaki T, Kidner JH, Koch V, Köhler A, Kraus FB, Lattorff HM, Leask M, Lockett GA, Mallon EB, Antonio DS, Marxer M, Meeus I, Moritz RF, Nair A, Näpflin K, Nissen I, Niu J, Nunes FM, Oakeshott JG, Osborne A, Otte M, Pinheiro DG, Rossié N, Rueppell O, Santos CG, Schmid-Hempel R, Schmitt BD, Schulte C, Simões ZL, Soares MP, Swevers L, Winnebeck EC, Wolschin F, Yu N, Zdobnov EM, Aqrawi PK, Blankenburg KP, Coyle M, Francisco L, Hernandez AG, Holder M, Hudson ME, Jackson L, Jayaseelan J, Joshi V, Kovar C, Lee SL, Mata R, Mathew T, Newsham IF, Ngo R, Okwuonu G, Pham C, Pu LL, Saada N, Santibanez J, Simmons D, Thornton R, Venkat A, Walden KK, Wu YQ, Debyser G, Devreese B, Asher C, Blommaert J, Chipman AD, Chittka L, Fouks B, Liu J, O'Neill MP, Sumner S, Puiu D, Qu J, Salzberg SL, Scherer SE, Muzny DM, Richards S, Robinson GE, Gibbs RA, Schmid-Hempel P, Worley KC. The genomes of two key bumblebee species with primitive eusocial organization. Genome Biol. 2015 Apr 24;16:76. doi: 10.1186/s13059-015-0623-3. PubMed PMID: 25908251; PubMed Central PMCID: PMC4414376.

Bombus terrestris
Sadd BM, Barribeau SM, Bloch G, de Graaf DC, Dearden P, Elsik CG, Gadau J, Grimmelikhuijzen CJ, Hasselmann M, Lozier JD, Robertson HM, Smagghe G, Stolle E, Van Vaerenbergh M, Waterhouse RM, Bornberg-Bauer E, Klasberg S, Bennett AK, Câmara F, Guigó R, Hoff K, Mariotti M, Munoz-Torres M, Murphy T, Santesmasses D, Amdam GV, Beckers M, Beye M, Biewer M, Bitondi MM, Blaxter ML, Bourke AF, Brown MJ, Buechel SD, Cameron R, Cappelle K, Carolan JC, Christiaens O, Ciborowski KL, Clarke DF, Colgan TJ, Collins DH, Cridge AG, Dalmay T, Dreier S, du Plessis L, Duncan E, Erler S, Evans J, Falcon T, Flores K, Freitas FC, Fuchikawa T, Gempe T, Hartfelder K, Hauser F, Helbing S, Humann FC, Irvine F, Jermiin LS, Johnson CE, Johnson RM, Jones AK, Kadowaki T, Kidner JH, Koch V, Köhler A, Kraus FB, Lattorff HM, Leask M, Lockett GA, Mallon EB, Antonio DS, Marxer M, Meeus I, Moritz RF, Nair A, Näpflin K, Nissen I, Niu J, Nunes FM, Oakeshott JG, Osborne A, Otte M, Pinheiro DG, Rossié N, Rueppell O, Santos CG, Schmid-Hempel R, Schmitt BD, Schulte C, Simões ZL, Soares MP, Swevers L, Winnebeck EC, Wolschin F, Yu N,Zdobnov EM, Aqrawi PK, Blankenburg KP, Coyle M, Francisco L, Hernandez AG, Holder M, Hudson ME, Jackson L, Jayaseelan J, Joshi V, Kovar C, Lee SL, Mata R, Mathew T, Newsham IF, Ngo R, Okwuonu G, Pham C, Pu LL, Saada N, Santibanez J, Simmons D, Thornton R, Venkat A, Walden KK, Wu YQ, Debyser G, Devreese B, Asher C, Blommaert J, Chipman AD, Chittka L, Fouks B, Liu J, O'Neill MP, Sumner S, Puiu D, Qu J, Salzberg SL, Scherer SE, Muzny DM, Richards S, Robinson GE, Gibbs RA, Schmid-Hempel P, Worley KC. The genomes of two key bumblebee species with primitive eusocial organization. Genome Biol. 2015 Apr 24;16:76. doi: 10.1186/s13059-015-0623-3. PubMed PMID: 25908251; PubMed Central PMCID: PMC4414376.

Bombus vancouverensis nearcticus
Heraghty SD, Sutton JM, Pimsler ML, Fierst JL, Strange JP, Lozier JD. De Novo Genome Assemblies for Three North American Bumble Bee Species: Bombus bifarius, Bombus vancouverensis, and Bombus vosnesenskii. G3 (Bethesda). 2020 Aug 5;10(8):2585-2592. doi: 10.1534/g3.120.401437. PMID: 32586847; PMCID: PMC7407468.

Bombus vosnesenskii
Heraghty SD, Sutton JM, Pimsler ML, Fierst JL, Strange JP, Lozier JD. De Novo Genome Assemblies for Three North American Bumble Bee Species: Bombus bifarius, Bombus vancouverensis, and Bombus vosnesenskii. G3 (Bethesda). 2020 Aug 5;10(8):2585-2592. doi: 10.1534/g3.120.401437. PMID: 32586847; PMCID: PMC7407468.

Camponotus floridanus
Bonasio R, Zhang G, Ye C, Mutti NS, Fang X, Qin N, Donahue G, Yang P, Li Q, Li C, Zhang P, Huang Z, Berger SL, Reinberg D, Wang J, Liebig J. Genomic comparison of the ants Camponotus floridanus and Harpegnathos saltator. Science. 2010 Aug 27;329(5995):1068-71. doi: 10.1126/science.1192428. PubMed PMID: 20798317; PubMed Central PMCID: PMC3772619.

Cardiocondyla obscurior
Schrader L, Kim JW, Ence D, Zimin A, Klein A, Wyschetzki K, Weichselgartner T, Kemena C, Stökl J, Schultner E, Wurm Y, Smith CD, Yandell M, Heinze J, Gadau J, Oettler J. Transposable element islands facilitate adaptation to novel environments in an invasive species. Nat Commun. 2014 Dec 16;5:5495. doi: 10.1038/ncomms6495. PubMed PMID: 25510865; PubMed Central PMCID: PMC4284661.

Cephus cintus
Robertson HM, Waterhouse RM, Walden KKO, Ruzzante L, Reijnders MJMF, Coates BS, Legeai F, Gress JC, Biyiklioglu S, Weaver DK, Wanner KW, Budak H. Genome Sequence of the Wheat Stem Sawfly, Cephus cinctus, Representing an Early-Branching Lineage of the Hymenoptera, Illuminates Evolution of Hymenopteran Chemoreceptors. Genome Biol Evol. 2018 Nov 1;10(11):2997-3011. doi: 10.1093/gbe/evy232. PubMed PMID: 30335145; PubMed Central PMCID: PMC6250288.

Ceratina calcarata
Rehan SM, Glastad KM, Lawson SP, Hunt BG. The Genome and Methylome of a Subsocial Small Carpenter Bee, Ceratina calcarata. Genome Biol Evol. 2016 May 13;8(5):1401-10. doi: 10.1093/gbe/evw079. PubMed PMID: 27048475; PubMed Central PMCID: PMC4898796.

Ceratosolen solmsi marchali
Xiao JH, Yue Z, Jia LY, Yang XH, Niu LH, Wang Z, Zhang P, Sun BF, He SM, Li Z, Xiong TL, Xin W, Gu HF, Wang B, Werren JH, Murphy RW, Wheeler D, Niu LM, Ma GC, Tang T, Bian SN, Wang NX, Yang CY, Wang N, Fu YG, Li WZ, Yi SV, Yang XY, Zhou Q, Lu CX, Xu CY, He LJ, Yu LL, Chen M, Zheng Y, Wang SW, Zhao S, Li YH, Yu YY, Qian XJ, Cai Y, Bian LL, Zhang S, Wang JY, Yin Y, Xiao H, Wang GH, Yu H, Wu WS, Cook JM, Wang J, Huang DW. Obligate mutualism within a host drives the extreme specialization of a fig wasp genome. Genome Biol. 2013 Dec 20;14(12):R141. doi: 10.1186/gb-2013-14-12-r141. PubMed PMID: 24359812; PubMed Central PMCID: PMC4053974.

Chelonus insularis
The C. insularis genome is not yet published. See the data usage policy at the i5K page for this species.

Copidosoma floridanum
Thomas GWC, Dohmen E, Hughes DST, Murali SC, Poelchau M, Glastad K, Anstead CA, Ayoub NA, Batterham P, Bellair M, Binford GJ, Chao H, Chen YH, Childers C, Dinh H, Doddapaneni HV, Duan JJ, Dugan S, Esposito LA, Friedrich M, Garb J, Gasser RB, Goodisman MAD, Gundersen-Rindal DE, Han Y, Handler AM, Hatakeyama M, Hering L, Hunter WB, Ioannidis P, Jayaseelan JC, Kalra D, Khila A, Korhonen PK, Lee CE, Lee SL, Li Y, Lindsey ARI, Mayer G, McGregor AP, McKenna DD, Misof B, Munidasa M, Munoz-Torres M, Muzny DM, Niehuis O, Osuji-Lacy N, Palli SR, Panfilio KA, Pechmann M, Perry T, Peters RS, Poynton HC, Prpic NM, Qu J, Rotenberg D, Schal C, Schoville SD, Scully ED, Skinner E, Sloan DB, Stouthamer R, Strand MR, Szucsich NU, Wijeratne A, Young ND, Zattara EE, Benoit JB, Zdobnov EM, Pfrender ME, Hackett KJ, Werren JH, Worley KC, Gibbs RA, Chipman AD, Waterhouse RM, Bornberg-Bauer E, Hahn MW, Richards S. Gene content evolution in the arthropods. Genome Biol. 2020 Jan 23;21(1):15. doi: 10.1186/s13059-019-1925-7. PMID: 31969194; PMCID: PMC6977273.

Cyphomyrmex costatus
Nygaard S, Hu H, Li C, Schiøtt M, Chen Z, Yang Z, Xie Q, Ma C, Deng Y, Dikow RB, Rabeling C, Nash DR, Wcislo WT, Brady SG, Schultz TR, Zhang G, Boomsma JJ. Reciprocal genomic evolution in the ant-fungus agricultural symbiosis. Nat Commun. 2016 Jul 20;7:12233. doi: 10.1038/ncomms12233. PubMed PMID: 27436133; PubMed Central PMCID: PMC4961791.

Diachasma alloeum
Tvedte ES, Walden KKO, McElroy KE, Werren JH, Forbes AA, Hood GR, Logsdon JM, Feder JL, Robertson HM. Genome of the Parasitoid Wasp Diachasma alloeum, an Emerging Model for Ecological Speciation and Transitions to Asexual Reproduction. Genome Biol Evol. 2019 Oct 1;11(10):2767-2773. doi: 10.1093/gbe/evz205. PubMed PMID: 31553440; PubMed Central PMCID: PMC6781843.

Dinoponera quadriceps
Patalano S, Vlasova A, Wyatt C, Ewels P, Camara F, Ferreira PG, Asher CL, Jurkowski TP, Segonds-Pichon A, Bachman M, González-Navarrete I, Minoche AE, Krueger F, Lowy E, Marcet-Houben M, Rodriguez-Ales JL, Nascimento FS, Balasubramanian S, Gabaldon T, Tarver JE, Andrews S, Himmelbauer H, Hughes WO, Guigó R, Reik W, Sumner S. Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies. Proc Natl Acad Sci U S A. 2015 Nov 10;112(45):13970-5. doi: 10.1073/pnas.1515937112. Epub 2015 Oct 19. PubMed PMID: 26483466; PubMed Central PMCID: PMC4653166.

Dufourea novaeangliae
Kapheim KM, Pan H, Li C, Salzberg SL, Puiu D, Magoc T, Robertson HM, Hudson ME, Venkat A, Fischman BJ, Hernandez A, Yandell M, Ence D, Holt C, Yocum GD, Kemp WP, Bosch J, Waterhouse RM, Zdobnov EM, Stolle E, Kraus FB, Helbing S, Moritz RF, Glastad KM, Hunt BG, Goodisman MA, Hauser F, Grimmelikhuijzen CJ, Pinheiro DG,
Nunes FM, Soares MP, Tanaka ÉD, Simões ZL, Hartfelder K, Evans JD, Barribeau SM, Johnson RM, Massey JH, Southey BR, Hasselmann M, Hamacher D, Biewer M, Kent CF, Zayed A, Blatti C 3rd, Sinha S, Johnston JS, Hanrahan SJ, Kocher SD, Wang J, Robinson GE, Zhang G. Social evolution. Genomic signatures of evolutionary transitions from solitary to group living. Science. 2015 Jun 5;348(6239):1139-43. doi: 10.1126/science.aaa4788. Epub 2015 May 14. PubMed PMID: 25977371; PubMed Central PMCID: PMC5471836.

Drosophila melanogaster
dos Santos G, Schroeder AJ, Goodman JL, Strelets VB, Crosby MA, Thurmond J, Emmert DB, Gelbart WM; FlyBase Consortium. FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations. Nucleic Acids Res. 2015 Jan;43(Database issue):D690-7. doi: 10.1093/nar/gku1099. Epub 2014 Nov 14. PubMed PMID: 25398896; PubMed Central PMCID: PMC4383921.

Eufriesea mexicana
Kapheim KM, Pan H, Li C, Salzberg SL, Puiu D, Magoc T, Robertson HM, Hudson ME, Venkat A, Fischman BJ, Hernandez A, Yandell M, Ence D, Holt C, Yocum GD, Kemp WP, Bosch J, Waterhouse RM, Zdobnov EM, Stolle E, Kraus FB, Helbing S, Moritz RF, Glastad KM, Hunt BG, Goodisman MA, Hauser F, Grimmelikhuijzen CJ, Pinheiro DG,Nunes FM, Soares MP, Tanaka ÉD, Simões ZL, Hartfelder K, Evans JD, Barribeau SM, Johnson RM, Massey JH, Southey BR, Hasselmann M, Hamacher D, Biewer M, Kent CF, Zayed A, Blatti C 3rd, Sinha S, Johnston JS, Hanrahan SJ, Kocher SD, Wang J, Robinson GE, Zhang G. Social evolution. Genomic signatures of evolutionary transitions from solitary to group living. Science. 2015 Jun 5;348(6239):1139-43. doi: 10.1126/science.aaa4788. Epub 2015 May 14. PubMed PMID: 25977371; PubMed Central PMCID: PMC5471836.

Fopius arisanus
Geib SM, Liang GH, Murphy TD, Sim SB. Whole Genome Sequencing of the Braconid Parasitoid Wasp Fopius arisanus, an Important Biocontrol Agent of Pest Tepritid Fruit Flies. G3 (Bethesda). 2017 Aug 7;7(8):2407-2411. doi: 10.1534/g3.117.040741. PubMed PMID: 28584080; PubMed Central PMCID: PMC5555450.

Formica exsecta
Dhaygude K, Nair A, Johansson H, Wurm Y, Sundström L. The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host. BMC Genomics. 2019 Apr 16;20(1):301. doi: 10.1186/s12864-019-5665-6. PMID: 30991952; PMCID: PMC6469114.

Habropoda laboriosa
Kapheim KM, Pan H, Li C, Salzberg SL, Puiu D, Magoc T, Robertson HM, Hudson ME, Venkat A, Fischman BJ, Hernandez A, Yandell M, Ence D, Holt C, Yocum GD, Kemp WP, Bosch J, Waterhouse RM, Zdobnov EM, Stolle E, Kraus FB, Helbing S, Moritz RF, Glastad KM, Hunt BG, Goodisman MA, Hauser F, Grimmelikhuijzen CJ, Pinheiro DG,Nunes FM, Soares MP, Tanaka ÉD, Simões ZL, Hartfelder K, Evans JD, Barribeau SM, Johnson RM, Massey JH, Southey BR, Hasselmann M, Hamacher D, Biewer M, Kent CF, Zayed A, Blatti C 3rd, Sinha S, Johnston JS, Hanrahan SJ, Kocher SD, Wang J, Robinson GE, Zhang G. Social evolution. Genomic signatures of evolutionary transitions from solitary to group living. Science. 2015 Jun 5;348(6239):1139-43. doi: 10.1126/science.aaa4788. Epub 2015 May 14. PubMed PMID: 25977371; PubMed Central PMCID: PMC5471836.

Harpegnathos saltator
Bonasio R, Zhang G, Ye C, Mutti NS, Fang X, Qin N, Donahue G, Yang P, Li Q, Li C, Zhang P, Huang Z, Berger SL, Reinberg D, Wang J, Liebig J. Genomic comparison of the ants Camponotus floridanus and Harpegnathos saltator. Science. 2010 Aug 27;329(5995):1068-71. doi: 10.1126/science.1192428. PubMed PMID: 20798317; PubMed Central PMCID: PMC3772619.

Lasioglossum albipes
Kocher SD, Li C, Yang W, Tan H, Yi SV, Yang X, Hoekstra HE, Zhang G, Pierce NE, Yu DW. The draft genome of a socially polymorphic halictid bee, Lasioglossum albipes. Genome Biol. 2013 Dec 20;14(12):R142. doi: 10.1186/gb-2013-14-12-r142. Erratum in: Genome Biol. 2015;16:34. PubMed PMID: 24359881; PubMed Central PMCID: PMC4062844.

Linepithema humile
Smith CD, Zimin A, Holt C, Abouheif E, Benton R, Cash E, Croset V, Currie CR, Elhaik E, Elsik CG, Fave MJ, Fernandes V, Gadau J, Gibson JD, Graur D, Grubbs KJ, Hagen DE, Helmkampf M, Holley JA, Hu H, Viniegra AS, Johnson BR, Johnson RM, Khila A, Kim JW, Laird J, Mathis KA, Moeller JA, Muñoz-Torres MC, Murphy MC, Nakamura R, Nigam S, Overson RP, Placek JE, Rajakumar R, Reese JT, Robertson HM, Smith CR, Suarez AV, Suen G, Suhr EL, Tao S, Torres CW, van Wilgenburg E, Viljakainen L, Walden KK, Wild AL, Yandell M, Yorke JA, Tsutsui ND. Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile). Proc Natl Acad Sci U S A. 2011 Apr 5;108(14):5673-8. doi: 10.1073/pnas.1008617108. Epub 2011 Jan 31. PubMed PMID: 21282631; PubMed Central PMCID: PMC3078359.

Megachile_rotundata
Kapheim KM, Pan H, Li C, Salzberg SL, Puiu D, Magoc T, Robertson HM, Hudson ME, Venkat A, Fischman BJ, Hernandez A, Yandell M, Ence D, Holt C, Yocum GD, Kemp WP, Bosch J, Waterhouse RM, Zdobnov EM, Stolle E, Kraus FB, Helbing S, Moritz RF, Glastad KM, Hunt BG, Goodisman MA, Hauser F, Grimmelikhuijzen CJ, Pinheiro DG,Nunes FM, Soares MP, Tanaka ÉD, Simões ZL, Hartfelder K, Evans JD, Barribeau SM, Johnson RM, Massey JH, Southey BR, Hasselmann M, Hamacher D, Biewer M, Kent CF, Zayed A, Blatti C 3rd, Sinha S, Johnston JS, Hanrahan SJ, Kocher SD, Wang J, Robinson GE, Zhang G. Social evolution. Genomic signatures of evolutionary transitions from solitary to group living. Science. 2015 Jun 5;348(6239):1139-43. doi: 10.1126/science.aaa4788. Epub 2015 May 14. PubMed PMID: 25977371; PubMed Central PMCID: PMC5471836.

Megalopta genalis
Kapheim KM, Jones BM, Pan H, Li C, Harpur BA, Kent CF, Zayed A, Ioannidis P, Waterhouse RM, Kingwell C, Stolle E, Avalos A, Zhang G, McMillan WO, Wcislo WT. Developmental plasticity shapes social traits and selection in a facultatively eusocial bee. Proc Natl Acad Sci U S A. 2020 Jun 16;117(24):13615-13625. doi: 10.1073/pnas.2000344117. Epub 2020 May 29. PMID: 32471944; PMCID: PMC7306772.

Melipona quadrifasciata
Kapheim KM, Pan H, Li C, Salzberg SL, Puiu D, Magoc T, Robertson HM, Hudson ME, Venkat A, Fischman BJ, Hernandez A, Yandell M, Ence D, Holt C, Yocum GD, Kemp WP, Bosch J, Waterhouse RM, Zdobnov EM, Stolle E, Kraus FB, Helbing S, Moritz RF, Glastad KM, Hunt BG, Goodisman MA, Hauser F, Grimmelikhuijzen CJ, Pinheiro DG,Nunes FM, Soares MP, Tanaka ÉD, Simões ZL, Hartfelder K, Evans JD, Barribeau SM, Johnson RM, Massey JH, Southey BR, Hasselmann M, Hamacher D, Biewer M, Kent CF, Zayed A, Blatti C 3rd, Sinha S, Johnston JS, Hanrahan SJ, Kocher SD, Wang J, Robinson GE, Zhang G. Social evolution. Genomic signatures of evolutionary transitions from solitary to group living. Science. 2015 Jun 5;348(6239):1139-43. doi: 10.1126/science.aaa4788. Epub 2015 May 14. PubMed PMID: 25977371; PubMed Central PMCID: PMC5471836.

Microplitis demolitor
Burke GR, Walden KKO, Whitfield JB, Robertson HM, Strand MR. Whole Genome Sequence of the Parasitoid Wasp Microplitis demolitor That Harbors an Endogenous Virus Mutualist. G3 (Bethesda). 2018 Aug 30;8(9):2875-2880. doi: 10.1534/g3.118.200308. PubMed PMID: 30018085; PubMed Central PMCID: PMC6118312.

Monomorium pharaonis
Mikheyev AS, Linksvayer TA. Genes associated with ant social behavior show distinct transcriptional and evolutionary patterns. Elife. 2015 Jan 26;4:e04775. doi: 10.7554/eLife.04775. PubMed PMID: 25621766; PubMed Central PMCID: PMC4383337.

Nasonia vitripennis
Nvit_psr_1.1
Dalla Benetta E, Antoshechkin I, Yang T, Nguyen HQM, Ferree PM, Akbari OS. Genome elimination mediated by gene expression from a selfish chromosome. Sci Adv. 2020 Apr 3;6(14):eaaz9808. doi: 10.1126/sciadv.aaz9808. PMID: 32284986; PMCID: PMC7124933.

Nvit_2.1, nvit_OGSv1.2 and Nvit_EviGene
Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK; Nasonia Genome Working Group, Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, Elsik CG, Grimmelikhuijzen CJ, Kitts P, Lynch JA, Murphy T, Oliveira DC, Smith CD, van de Zande L, Worley KC, Zdobnov EM, Aerts M, Albert S, Anaya VH, Anzola JM, Barchuk AR, Behura SK, Bera AN, Berenbaum MR, Bertossa RC, Bitondi MM, Bordenstein SR, Bork P, Bornberg-Bauer E, Brunain M, Cazzamali G, Chaboub L, Chacko J, Chavez D, Childers CP, Choi JH, Clark ME, Claudianos C, Clinton RA, Cree AG, Cristino AS, Dang PM, Darby AC, de Graaf DC, Devreese B, Dinh HH, Edwards R, Elango N, Elhaik E, Ermolaeva O, Evans JD, Foret S, Fowler GR, Gerlach D, Gibson JD, Gilbert DG, Graur D, Gründer S, Hagen DE, Han Y, Hauser F, Hultmark D, Hunter HC 4th, Hurst GD, Jhangian SN, Jiang H, Johnson RM, Jones AK, Junier T, Kadowaki T, Kamping A, Kapustin Y, Kechavarzi B, Kim J, Kim J, Kiryutin B, Koevoets T, Kovar CL, Kriventseva EV, Kucharski R, Lee H, Lee SL, Lees K, Lewis LR, Loehlin DW, Logsdon JM Jr, Lopez JA, Lozado RJ, Maglott D, Maleszka R, Mayampurath A, Mazur DJ, McClure MA, Moore AD, Morgan MB, Muller J, Munoz-Torres MC, Muzny DM, Nazareth LV, Neupert S, Nguyen NB, Nunes FM, Oakeshott JG, Okwuonu GO, Pannebakker BA, Pejaver VR, Peng Z, Pratt SC, Predel R, Pu LL, Ranson H, Raychoudhury R, Rechtsteiner A, Reese JT, Reid JG, Riddle M, Robertson HM, Romero-Severson J, Rosenberg M, Sackton TB, Sattelle DB, Schlüns H, Schmitt T, Schneider M, Schüler A, Schurko AM, Shuker DM, Simões ZL, Sinha S, Smith Z, Solovyev V, Souvorov A, Springauf A, Stafflinger E, Stage DE, Stanke M, Tanaka Y, Telschow A, Trent C, Vattathil S, Verhulst EC, Viljakainen L, Wanner KW, Waterhouse RM, Whitfield JB, Wilkes TE, Williamson M, Willis JH, Wolschin F, Wyder S, Yamada T, Yi SV, Zecher CN, Zhang L, Gibbs RA.Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Science. 2010 Jan 15;327(5963):343-8. doi: 10.1126/science.1178028. Erratum in: Science. 2010 Mar 26;327(5973):1577. PubMed PMID: 20075255; PubMed Central PMCID: PMC2849982.

Neodiprion lecontei
Linnen CR, O'Quin CT, Shackleford T, Sears CR, Lindstedt C. Genetic Basis of Body Color and Spotting Pattern in Redheaded Pine Sawfly Larvae (Neodiprion lecontei). Genetics. 2018 May;209(1):291-305. doi: 10.1534/genetics.118.300793. Epub 2018 Mar 1. PMID: 29496749; PMCID: PMC5937194.

Nomia melanderi
Kapheim KM, Pan H, Li C, Blatti C 3rd, Harpur BA, Ioannidis P, Jones BM, Kent CF, Ruzzante L, Sloofman L, Stolle E, Waterhouse RM, Zayed A, Zhang G, Wcislo WT. Draft Genome Assembly and Population Genetics of an Agricultural Pollinator, the Solitary Alkali Bee (Halictidae: Nomia melanderi). G3 (Bethesda). 2019 Mar 7;9(3):625-634. doi: 10.1534/g3.118.200865. PMID: 30642875; PMCID: PMC6404593.

Odontomachus brunneus
The O. brunneus genome is not yet published. See the data usage policy at the i5K page for this species.

Ooceraea biroi
Oxley PR, Ji L, Fetter-Pruneda I, McKenzie SK, Li C, Hu H, Zhang G, Kronauer DJ. The genome of the clonal raider ant Cerapachys biroi. Curr Biol. 2014 Feb 17;24(4):451-8. doi: 10.1016/j.cub.2014.01.018. Epub 2014 Feb 6. PubMed PMID: 24508170; PubMed Central PMCID: PMC3961065.

Orussus abietinus
Oeyen JP, Baa-Puyoulet P, Benoit JB, Beukeboom LW, Bornberg-Bauer E, Buttstedt A, Calevro F, Cash EI, Chao H, Charles H, Chen MM, Childers C, Cridge AG, Dearden P, Dinh H, Doddapaneni HV, Dolan A, Donath A, Dowling D, Dugan S, Duncan E, Elpidina EN, Friedrich M, Geuverink E, Gibson JD, Grath S, Grimmelikhuijzen CJP, Große-Wilde E, Gudobba C, Han Y, Hansson BS, Hauser F, Hughes DST, Ioannidis P, Jacquin-Joly E, Jennings EC, Jones JW, Klasberg S, Lee SL, Lesný P, Lovegrove M, Martin S, Martynov AG, Mayer C, Montagné N, Moris VC, Munoz-Torres M, Murali SC, Muzny DM, Oppert B, Parisot N, Pauli T, Peters RS, Petersen M, Pick C, Persyn E, Podsiadlowski L, Poelchau MF, Provataris P, Qu J, Reijnders MJMF, von Reumont BM, Rosendale AJ, Simao FA, Skelly J, Sotiropoulos AG, Stahl AL, Sumitani M, Szuter EM, Tidswell O, Tsitlakidis E, Vedder L, Waterhouse RM, Werren JH, Wilbrandt J, Worley KC, Yamamoto DS, van de Zande L, Zdobnov EM, Ziesmann T, Gibbs RA, Richards S, Hatakeyama M, Misof B, Niehuis O. Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera. Genome Biol Evol. 2020 Jul 1;12(7):1099-1188. doi: 10.1093/gbe/evaa106. PMID: 32442304; PMCID: PMC7455281.

Osmia bicornis bicornis
Beadle K, Singh KS, Troczka BJ, Randall E, Zaworra M, Zimmer CT, Hayward A, Reid R, Kor L, Kohler M, Buer B, Nelson DR, Williamson MS, Davies TGE, Field LM, Nauen R, Bass C. Genomic insights into neonicotinoid sensitivity in the solitary bee Osmia bicornis. PLoS Genet. 2019 Feb 4;15(2):e1007903. doi: 10.1371/journal.pgen.1007903. PMID: 30716069; PMCID: PMC6375640.

Osmia lignaria
The O. lignaria genome is not yet published. See the data usage policy at the i5K page for this species.

Pogonomyrmex barbatus
Smith CR, Smith CD, Robertson HM, Helmkampf M, Zimin A, Yandell M, Holt C, Hu H, Abouheif E, Benton R, Cash E, Croset V, Currie CR, Elhaik E, Elsik CG, Favé MJ, Fernandes V, Gibson JD, Graur D, Gronenberg W, Grubbs KJ, Hagen DE, Viniegra AS, Johnson BR, Johnson RM, Khila A, Kim JW, Mathis KA, Munoz-Torres MC, Murphy MC, Mustard JA, Nakamura R, Niehuis O, Nigam S, Overson RP, Placek JE, Rajakumar R, Reese JT, Suen G, Tao S, Torres CW, Tsutsui ND, Viljakainen L, Wolschin F, Gadau J. Draft genome of the red harvester ant Pogonomyrmex barbatus. Proc Natl Acad Sci U S A. 2011 Apr 5;108(14):5667-72. doi: 10.1073/pnas.1007901108. Epub 2011 Jan 31. PubMed PMID: 21282651; PubMed Central PMCID: PMC3078412.

Polistes Canadensis
Patalano S, Vlasova A, Wyatt C, Ewels P, Camara F, Ferreira PG, Asher CL, Jurkowski TP, Segonds-Pichon A, Bachman M, González-Navarrete I, Minoche AE, Krueger F, Lowy E, Marcet-Houben M, Rodriguez-Ales JL, Nascimento FS, Balasubramanian S, Gabaldon T, Tarver JE, Andrews S, Himmelbauer H, Hughes WO, Guigó R, Reik W, Sumner S. Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies. Proc Natl Acad Sci U S A. 2015 Nov 10;112(45):13970-5. doi: 10.1073/pnas.1515937112. Epub 2015 Oct 19. PubMed PMID: 26483466; PubMed Central PMCID: PMC4653166.

Polistes dominula
Standage DS, Berens AJ, Glastad KM, Severin AJ, Brendel VP, Toth AL. Genome, transcriptome and methylome sequencing of a primitively eusocial wasp reveal a greatly reduced DNA methylation system in a social insect. Mol Ecol. 2016 Apr;25(8):1769-84. doi: 10.1111/mec.13578. Epub 2016 Mar 15. PubMed PMID: 26859767.

Pseudomyrmex gracilis
Rubin BE, Moreau CS. Comparative genomics reveals convergent rates of evolution in ant-plant mutualisms. Nat Commun. 2016 Aug 25;7:12679. doi: 10.1038/ncomms12679. PubMed PMID: 27557866; PubMed Central PMCID: PMC5007375.

Solenopsis invicta
Wurm Y, Wang J, Riba-Grognuz O, Corona M, Nygaard S, Hunt BG, Ingram KK, Falquet L, Nipitwattanaphon M, Gotzek D, Dijkstra MB, Oettler J, Comtesse F, Shih CJ, Wu WJ, Yang CC, Thomas J, Beaudoing E, Pradervand S, Flegel V, Cook ED, Fabbretti R, Stockinger H, Long L, Farmerie WG, Oakey J, Boomsma JJ, Pamilo P, Yi SV, Heinze J, Goodisman MA, Farinelli L, Harshman K, Hulo N, Cerutti L, Xenarios I, Shoemaker D, Keller L. The genome of the fire ant Solenopsis invicta. Proc Natl Acad Sci U S A. 2011 Apr 5;108(14):5679-84. doi: 10.1073/pnas.1009690108. Epub 2011 Jan 31. PubMed PMID: 21282665; PubMed Central PMCID: PMC3078418.

Temnothorax curvispinosus
The T. curvispinosus genome is not yet published. Please follow the data usage policy.

Trachymyrmex cornetzi
Nygaard S, Hu H, Li C, Schiøtt M, Chen Z, Yang Z, Xie Q, Ma C, Deng Y, Dikow RB, Rabeling C, Nash DR, Wcislo WT, Brady SG, Schultz TR, Zhang G, Boomsma JJ. Reciprocal genomic evolution in the ant-fungus agricultural symbiosis. Nat Commun. 2016 Jul 20;7:12233. doi: 10.1038/ncomms12233. PubMed PMID: 27436133; PubMed Central PMCID: PMC4961791.

Trachymyrmex septentrionalis
Nygaard S, Hu H, Li C, Schiøtt M, Chen Z, Yang Z, Xie Q, Ma C, Deng Y, Dikow RB, Rabeling C, Nash DR, Wcislo WT, Brady SG, Schultz TR, Zhang G, Boomsma JJ. Reciprocal genomic evolution in the ant-fungus agricultural symbiosis. Nat Commun. 2016 Jul 20;7:12233. doi: 10.1038/ncomms12233. PubMed PMID: 27436133; PubMed Central PMCID: PMC4961791.

Trachymyrmex zeteki
Nygaard S, Hu H, Li C, Schiøtt M, Chen Z, Yang Z, Xie Q, Ma C, Deng Y, Dikow RB, Rabeling C, Nash DR, Wcislo WT, Brady SG, Schultz TR, Zhang G, Boomsma JJ. Reciprocal genomic evolution in the ant-fungus agricultural symbiosis. Nat Commun. 2016 Jul 20;7:12233. doi: 10.1038/ncomms12233. PubMed PMID: 27436133; PubMed Central PMCID: PMC4961791.

Trichogramma pretiosum
Lindsey ARI, Kelkar YD, Wu X, Sun D, Martinson EO, Yan Z, Rugman-Jones PF, Hughes DST, Murali SC, Qu J, Dugan S, Lee SL, Chao H, Dinh H, Han Y, Doddapaneni HV, Worley KC, Muzny DM, Ye G, Gibbs RA, Richards S, Yi SV, Stouthamer R, Werren JH. Comparative genomics of the miniature wasp and pest control agent Trichogramma pretiosum. BMC Biol. 2018 May 18;16(1):54. doi: 10.1186/s12915-018-0520-9. PubMed PMID: 29776407; PubMed Central PMCID: PMC5960102.

Vollenhovia emeryi
Smith CR, Helms Cahan S, Kemena C, Brady SG, Yang W, Bornberg-Bauer E, Eriksson T, Gadau J, Helmkampf M, Gotzek D, Okamoto Miyakawa M, Suarez AV, Mikheyev A. How Do Genomes Create Novel Phenotypes? Insights from the Loss of the Worker Caste in Ant Social Parasites. Mol Biol Evol. 2015 Nov;32(11):2919-31. doi: 10.1093/molbev/msv165. Epub 2015 Jul 29. PubMed PMID: 26226984; PubMed Central PMCID: PMC4651238.

Wasmannia auropunctata
The W. auropunctata genome is not yet published. Please follow the data usage policy.