OGS GFF3 files

The files below are gff3 formatted Official Gene Sets (OGS) from the original genome publications. In most cases, the OGS were transferred to newer assemblies using the UCSC LiftOver tool as implemented in the flo tool from the Wurm lab. The files with OGS transferred to newer assemblies have the word "liftover" in the file names. To access the OGS on the original published assemblies, go to the archived website for BeeBase, NasoniaBase or the Ant Genomes Portal.

The identifiers in the files below are those used in HymenopteraMine. In many cases the original gff3 were missing gene lines, so these were computed and new gene ids were assigned. The original ids are provided by the Alias tag in column 9 of the gff3. 

The genome assemblies on which these files are based are from a data freeze on April 4, 2019. We anticipate an update in August 2020 based on a May 2020 data freeze.

 

Acromyrmex_echinatior_aech_OGSv3.8_liftover_Aech_3.9.gff3

Apis_mellifera_amel_OGSv3.2_liftover_Amel_HAv3.1.gff3

Atta_cephalotes_acep_OGSv1.2_liftover_Attacep1.0.gff3

Bombus_impatiens_bimp_OGSv1.0_liftover_BIMP_2.2.gff3

Camponotus_floridanus_cflo_OGSv3.3_liftover_Cflo_v7.5.gff3

Cardiocondyla_obscurior_Cobs1.4.ogs.gff3

Dufourea_novaeangliae_v1.1_liftover_ASM127255v1.gff3

Eufriesea_mexicana_v1.1_liftover_ASM148370v1.gff3

Habropoda_laboriosa_v1.2_liftover_ASM126327v1.gff3

Harpegnathos_saltator_hsal_OGSv3.3_liftover_Hsal_v8.5.gff3

Lasioglossum_albipes_Lalb_OGS_v5.42_hgd_id.gff3

Linepithema_humile_lhum_OGSv1.2_liftover_Lhum_UMD_V04.gff3

Megachile_rotundata_v1.1_hgd_id.gff3

Melipona_quadrifasciata_v1.1_liftover_ASM127656v1.gff3

Nasonia_vitripennis_nvit2_evigenes_pub11u_liftover_Nvit_2.1.gff3

Nasonia_vitripennis_nvit_OGSv1.2_liftover_Nvit_2.1.gff3

Ooceraea_biroi_armyant.OGS.V1.8.6_liftover_Obir_v5.4.gff3

Pogonomyrmex_barbatus_pbar_OGSv1.2_liftover_Pbar_UMD_V03.gff3

Solenopsis_invicta_sinv_OGSv2.2.3_liftover_Si_gnH.gff3